PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01047.1.g00010.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26203 Da    PI: 4.92
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01047.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-1849102456
                                     -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     +++ft+eq++ Le+ F+    ++  +e++eLA+++gL+ rqV +WFqN+Ra+++
  Zpz_sc01047.1.g00010.1.sm.mkhc  49 KRRFTEEQVRSLETTFHArRAKLEPKEKAELAREMGLQPRQVAIWFQNKRARWR 102
                                     458**************8899********************************9 PP

2HD-ZIP_I/II1185.2e-3847140193
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 
                                     e+krr+++eqv++LE++F++++ kLep++K+elare+glqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal++  e
  Zpz_sc01047.1.g00010.1.sm.mkhc  47 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELAREMGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDLVE 125
                                     69*****************9999******************************************************** PP

                     HD-ZIP_I/II  79 rLekeveeLreelke 93 
                                     +L++e+ +L+++l+e
  Zpz_sc01047.1.g00010.1.sm.mkhc 126 SLKQEKVALAAQLDE 140
                                     **********99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1732106IPR009057Homeodomain-like
PROSITE profilePS5007116.98943104IPR001356Homeobox domain
SMARTSM003891.1E-1646108IPR001356Homeobox domain
PfamPF000461.9E-1549102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1849110IPR009057Homeodomain-like
CDDcd000861.31E-1552105No hitNo description
PRINTSPR000311.3E-67584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.3E-684100IPR000047Helix-turn-helix motif
PfamPF021832.7E-12104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MERDCQFLVP PPPQHQHEDQ LLHQLMMVGD QDPVGAAGMR GGGGGGERKR RFTEEQVRSL  60
ETTFHARRAK LEPKEKAELA REMGLQPRQV AIWFQNKRAR WRSKQLEHDY ADLRARYDAL  120
RDLVESLKQE KVALAAQLDE LKGRLNEPQD QSGSSCNITG GTASFDVDDK RNNNSSVSSQ  180
DDGAMAPAVA TSEDSTAAGY YDDHAVAYGG GLPDPFCNPP ELWDTWPLLE WNAVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-112AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-112AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-112EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.11e-101homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U18e-85HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A096RWP51e-101A0A096RWP5_MAIZE; Uncharacterized protein
STRINGGRMZM2G117164_P011e-101(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-32homeobox 7